| * Ensembl | Genome databases for vertebrates and other eukaryotic species. Displays include transcript variation, genomic alignments, phylogenetic trees and genetic variation. European Bioinformatics Institute and Wellcome Trust Sanger Institute. |
| * UCSC Genome Browser | Interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. |
| Annmap | Genome browser includes mappings between genomic features and Affymetrix microarrays. |
| Artemis Genome Browser | Sanger Institute's genome browser and annotation tool that allows visualisation of sequence features, next generation data. |
| Biodalliance | A fast, interactive, genome visualization tool that's easy to embed in web pages and applications. It supports integration of data from a wide variety of sources, and can load data directly from popular genomics file formats. |
| CGView | Circular Genome Viewer for generating high quality, zoomable maps of circular genomes. PNG, JPG, or Scalable Vector Graphics (SVG) format. |
| ChromoZoom | Interactive genome browser for both curated and custom data, with a focus on ease of use and flexibility. |
| CiVi | Circular Visualization for microbial genomes to create circular genome maps. |
| Circleator | Circleator produces circular plots of genome-associated data. |
| Circos | Software package for circular information presentation for comparative genomics |
| DiProGB | Visualization of nucleotide sequences as dinucleotide-encoded sequence graphs. |
| EpiGenomeBrowser | |
| G-compass | Comparative genome browser that visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments. |
| GenPlay | Can display either micro-array or sequencing data. It also displays tracks adapted to summarize gene structure, gene expression; repeat families, CPG islands. |
| GenomeView | GenomeView provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. |
| Golden Helix GenomeBrowse | Multiple coverage and pile-up views that make mismatches stand out. A large annotation library curated by Golden Helix. |
| HuRef Genome Browser | Diploid genome sequence of J. Craig Venter. The graphical interface depicts the haploid sequence with SNP and insertion/deletion DNA variants as identified by genome assembly and comparison methods. |
| Integrated Genome Browser (IGB) | Customizable genome browser you can use to view and explore genomic data and annotations, especially RNA-Seq and ChIP-Seq data sets. |
| Integrative Genomics Viewer (IGV) | Visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations. |
| JBrowse Genome Browser | A fast, embeddable genome browser. |
| MochiView | Provides a powerful interface for setting up plots using databases. Gene tracks specialized to allow display of multiple isoforms and sub-features such as introns, exons, and UTRs. |
| NCBI Gene view | This site provides an integrated graphic view of genomic regions, transcripts, products and other features for genes from diverse organisms. |
| NCBI Genome Data Viewer (GDV) | GDV browser displays biological information mapped to a genome, including gene annotation, variation data, BLAST alignments, and experimental study data from the NCBI GEO and dbGaP databases. |
| Plant Epigenome Browser | PlantGDB genome browsers to display current gene structure models and transcript evidence from spliced alignments of EST and cDNA sequences. |
| TGAC Genome Browser | Genomic Browser developed to visualise genome annotation from Ensembl Database Schema. |
| VEGA Genome Browser | A repository for high-quality gene models produced by the manual annotation of vertebrate genomes. |
